CDS

Accession Number TCMCG066C14612
gbkey CDS
Protein Id XP_034590179.1
Location complement(join(3118548..3118731,3118914..3119048,3119219..3119421,3119545..3119776,3120133..3120318,3120649..3120809,3121657..3121860,3122054..3122438,3123022..3123238,3123693..3123773,3123869..3123918,3124013..3124065))
Gene LOC117852270
GeneID 117852270
Organism Setaria viridis

Protein

Length 696aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA633601
db_source XM_034734288.1
Definition pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Setaria viridis]

EGGNOG-MAPPER Annotation

COG_category A
Description helicase superfamily c-terminal domain
KEGG_TC -
KEGG_Module M00341        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
ko03051        [VIEW IN KEGG]
KEGG_ko ko:K03061        [VIEW IN KEGG]
ko:K12818        [VIEW IN KEGG]
EC 3.6.4.13        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03040        [VIEW IN KEGG]
ko03050        [VIEW IN KEGG]
ko05169        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
map03050        [VIEW IN KEGG]
map05169        [VIEW IN KEGG]
GOs GO:0000182        [VIEW IN EMBL-EBI]
GO:0001817        [VIEW IN EMBL-EBI]
GO:0001819        [VIEW IN EMBL-EBI]
GO:0001932        [VIEW IN EMBL-EBI]
GO:0001934        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003724        [VIEW IN EMBL-EBI]
GO:0003725        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004004        [VIEW IN EMBL-EBI]
GO:0004386        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006356        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006412        [VIEW IN EMBL-EBI]
GO:0006413        [VIEW IN EMBL-EBI]
GO:0006518        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008026        [VIEW IN EMBL-EBI]
GO:0008134        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008186        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009966        [VIEW IN EMBL-EBI]
GO:0009967        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010562        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0010646        [VIEW IN EMBL-EBI]
GO:0010647        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019220        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0023051        [VIEW IN EMBL-EBI]
GO:0023056        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031334        [VIEW IN EMBL-EBI]
GO:0031399        [VIEW IN EMBL-EBI]
GO:0031401        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032270        [VIEW IN EMBL-EBI]
GO:0032479        [VIEW IN EMBL-EBI]
GO:0032481        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033613        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0042325        [VIEW IN EMBL-EBI]
GO:0042327        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043021        [VIEW IN EMBL-EBI]
GO:0043023        [VIEW IN EMBL-EBI]
GO:0043043        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043254        [VIEW IN EMBL-EBI]
GO:0043408        [VIEW IN EMBL-EBI]
GO:0043410        [VIEW IN EMBL-EBI]
GO:0043484        [VIEW IN EMBL-EBI]
GO:0043565        [VIEW IN EMBL-EBI]
GO:0043603        [VIEW IN EMBL-EBI]
GO:0043604        [VIEW IN EMBL-EBI]
GO:0044087        [VIEW IN EMBL-EBI]
GO:0044089        [VIEW IN EMBL-EBI]
GO:0044093        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044445        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044877        [VIEW IN EMBL-EBI]
GO:0045893        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0045937        [VIEW IN EMBL-EBI]
GO:0045943        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048584        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051090        [VIEW IN EMBL-EBI]
GO:0051091        [VIEW IN EMBL-EBI]
GO:0051092        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051130        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051174        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051240        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051247        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061702        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065009        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070035        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0072559        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1900225        [VIEW IN EMBL-EBI]
GO:1900227        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901566        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902531        [VIEW IN EMBL-EBI]
GO:1902533        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:1990837        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCCGTCCTTCTATGCGGGTGCCTCCCCGCACAAGCAGCAGCCGTACCAGAGGCGGAGGCAGGAGATTCGGCAGCAGCGGAAGTCGCTCCCCATTGCGTCAGTGGAGAAGAGGCTAGTTGACGAGGTCAGGAAGAACGACACACTGATCATAGTTGGTGAGACTGGGAGTGGCAAGACTACTCAGCTGCCACAATTTTTATACGATGGTGGATTTTGTCAAAATGGTAAAGTCATTGGCATCACTCAGCCTCGAAGAGTTGCAGCAGTGACAGTAGCGAAGCGTGTAGCTGAGGAATGTAACGATCAGCTGGGCAAAAAGGTTGGATACTCTATCAGATTTGATGATTCCACATCCAATGCAACAAGGATTAAATACATGACTGATGGTTTGCTTCTGAGGGAAGCACTTTTGGATCCACTTTTGTCTAAATATAGTGTTATAGTGGTTGATGAGGCTCATGAAAGGACTGTCCATACTGATGTATTACTGGGTTTGTTGAAAAAAGTGCAACATTCCCGAGCCAATGCCAGTAAGAATGGGAAGACTTTGCCTGACATATGGGGCCATTCTCAAAATTTAACTCAGAAGGCATGCCAGGAAACAAGATGTGCTCCTCTGAAGTTGATAATTATGTCTGCTAGTTTGGATGCCAAGTGTTTTTCTGATTATTTTGGTGGTGCTAAAGCTGTACATATTCAAGGTCGGCAGCATCCTGTCGACATACTATATACGTATCAGCCTGAGCCGGATTATCTTGATGCCACTCTAGTTACTATCTTTCAGATTCATTTGGAGGAAGGGCCTGGAGACATTCTTGCATTTCTAACTGGCCAAGAGGAGATTGAATCACTAGAGAGAATTATTTATGAGCGTGCTCGTTTACTTCCACCAGAAAGTAGTAAGATATGGACTACACCTATTTACTCATCTCTCCCATCGGAGCAGCAAATGAATGCTTTTAAGTCAGCACCAGCTGGAACCCGCAAGGTAGTTCTAGCAACCAATATTGCTGAGACTTCTGTAACAATAACTGGCATCAAATATGTTATTGATCCTGGGATGGTAAAAGCTCGTGCTTACAATCCTGTGACTGGAATGGAATCATTAATCATCATCCCAGTCTCGAAAGCGCAGGCTCTTCAAAGGAGTGGTCGTGCTGGACGCGAGGGGCCTGGAAAGTGCTTCCGATTGTTCCAAGAAAGTGAATTTGATAAGCTGGTGGACTCTACTGTTCCTGAGATCAAGCGGTGTAACCTCTCAAACATTGTTCTGCAACTCAAGGCCCTTGGAATCGATGATATCATAGGTTTTGATTTTATGGAGAAACCATCAAGGACTGCTATTTTGAAATCATTGGAGCAGTTAATCTTACTAGGGGCTCTGACCGATGATTATAAACTGTCAGACCCAGTTGGCCATCAGATGGCTAGGCTGCCTTTAGATCCAATGTACTCCAAGGCATTAATAGTGTCAAGTGAATTCAAGTGCTTGGAAGAAATGCTGATTGTTGTATCTATGCTTTCAGTGGAATCAATTTTTTTCTGCCCACGCGAGAAGTTAGAAGAGGCAAGAGCTGCTAGGAAGGGTTTTGAAAGCTCGGAAGGCGACCATATCACCTTGGTGAATGTCTATCGAGCAGCTGCAGAATGCTTGGAGAAGAGCAAAAATGCAAATGCCAAAGAGAGAACAATGGAAAAAGCTTTGAACAGATGGTGCAAGGAAAACTTTATCAACAACCGCTCTCTAAAACATGCTCTTGATGTTCACAGTCAAATTCAGGGCCATGTCCAACAAATGGGGCTCAACCTGTCATCATGTGGAGATGACATGGCTTTGTTTCGGAGATGCCTCACGGCTGCCTTCTTCTTGAATGCAGCAATGCGACAGCCAGATGGATCATACAGGGCTCTTGCAACAGGCCAGAGCGTTCAGATCCATCCTTCATCAGTGCTATTCCGGACCAAGCCGGACTGTGTCATCTTCAACGAGCTGGTCCGGACGACGCAGAATTACGTCAAAAACCTGACCCGGATCGACCCATTGTGGCTAGCTGAGCTGGCCCCGCAGTACTACGCTACCGAGGATTGA
Protein:  
MPSFYAGASPHKQQPYQRRRQEIRQQRKSLPIASVEKRLVDEVRKNDTLIIVGETGSGKTTQLPQFLYDGGFCQNGKVIGITQPRRVAAVTVAKRVAEECNDQLGKKVGYSIRFDDSTSNATRIKYMTDGLLLREALLDPLLSKYSVIVVDEAHERTVHTDVLLGLLKKVQHSRANASKNGKTLPDIWGHSQNLTQKACQETRCAPLKLIIMSASLDAKCFSDYFGGAKAVHIQGRQHPVDILYTYQPEPDYLDATLVTIFQIHLEEGPGDILAFLTGQEEIESLERIIYERARLLPPESSKIWTTPIYSSLPSEQQMNAFKSAPAGTRKVVLATNIAETSVTITGIKYVIDPGMVKARAYNPVTGMESLIIIPVSKAQALQRSGRAGREGPGKCFRLFQESEFDKLVDSTVPEIKRCNLSNIVLQLKALGIDDIIGFDFMEKPSRTAILKSLEQLILLGALTDDYKLSDPVGHQMARLPLDPMYSKALIVSSEFKCLEEMLIVVSMLSVESIFFCPREKLEEARAARKGFESSEGDHITLVNVYRAAAECLEKSKNANAKERTMEKALNRWCKENFINNRSLKHALDVHSQIQGHVQQMGLNLSSCGDDMALFRRCLTAAFFLNAAMRQPDGSYRALATGQSVQIHPSSVLFRTKPDCVIFNELVRTTQNYVKNLTRIDPLWLAELAPQYYATED